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All Samples(1)  |  Call(0)  |  Derive(0)  |  Import(1)
File Parser Class for BAM File.

File is gzip-compatible and binary.
Information available is the same that is in SAM format.

The bitwise flag is made like this:
dec meaning
--- -------
1   paired read
2   proper pair(more...)

src/a/r/AREM-1.0.1/AREM/OptValidator.py   AREM(Download)
from subprocess import Popen, PIPE
from math import log
from AREM.IO.Parser import BEDParser, ELANDResultParser, ELANDMultiParser, ELANDExportParser, PairEndELANDMultiParser, SAMParser, BAMParser, BowtieParser,  guess_parser
# ------------------------------------
# constants