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src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/MoleculePreparation.py   Pymol-script-repo(Download)
 
 
from AutoDockTools.atomTypeTools import NonpolarHydrogenMerger
from AutoDockTools.atomTypeTools import LonepairMerger
from AutoDockTools.atomTypeTools import SolvationParameterizer
    def cleanUpAtomTypes(self, mol, cleanup_list):
        debug = self.debug
        merge_nonpolar_hydrogens = 'nphs' in cleanup_list
        if merge_nonpolar_hydrogens:
            NPHM = self.NPHM = NonpolarHydrogenMerger()

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/AdtNodes.py   Pymol-script-repo(Download)
from MolKit.protein import Residue, ResidueSet, Chain, ChainSet
from AutoDockTools.atomTypeTools import AutoDock4_AtomTyper
from AutoDockTools.atomTypeTools import NonpolarHydrogenMerger, LonepairMerger
from AutoDockTools.atomTypeTools import AromaticCarbonManager, SolvationParameterizer
from AutoDockTools.MoleculePreparation import RotatableBondManager