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src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/MoleculePreparation.py   Pymol-script-repo(Download)
from AutoDockTools.atomTypeTools import NonpolarHydrogenMerger
from AutoDockTools.atomTypeTools import LonepairMerger
from AutoDockTools.atomTypeTools import SolvationParameterizer
from AutoDockTools.atomTypeTools import AromaticCarbonManager
from AutoDockTools.atomTypeTools import AutoDock4_AtomTyper
 
        # add solvation parameters here:
        SP = self.SP = SolvationParameterizer()
        unknownatoms = SP.addParameters(molecule.chains.residues.atoms)
        if len(unknownatoms) and debug:

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/VisionInterface/AdtNodes.py   Pymol-script-repo(Download)
from AutoDockTools.atomTypeTools import AutoDock4_AtomTyper
from AutoDockTools.atomTypeTools import NonpolarHydrogenMerger, LonepairMerger
from AutoDockTools.atomTypeTools import AromaticCarbonManager, SolvationParameterizer
from AutoDockTools.MoleculePreparation import RotatableBondManager
from AutoDockTools.MoleculePreparation import LigandWriter, AD4LigandWriter

src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/Utilities24/pdbqt_to_pdbqs.py   Pymol-script-repo(Download)
from MolKit import Read
from MolKit.pdbWriter import PdbqsWriter
from AutoDockTools.atomTypeTools import SolvationParameterizer
 
 
    #possible clean-up???
    #need to type atoms + assign babel_types
    solparer = SolvationParameterizer()
    solparer.addParameters(mol.allAtoms)
    if verbose: