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src/p/y/Pymol-script-repo-HEAD/modules/ADT/AutoDockTools/autoanalyzeCommands.py   Pymol-script-repo(Download)
        #replace default _get_distance with _get_distance_subset
        #clusterer.set_get_distance(get_distance_subset)
        clusterer.set_get_distance(clusterer._get_distance_subset)
        for tol in toleranceList:
            print 'clustering at ', tol