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Top level of GFF parsing providing shortcuts for useful classes.

src/e/d/edge-HEAD/example/parse.py   edge(Download)
import sys
from BCBio import GFF
 
def parse(fn):
    in_handle = open(fn)

src/e/d/edge-HEAD/example/gb2gff.py   edge(Download)
from Bio import Seq
 
from BCBio import GFF
 
def main(gb_file):

src/b/c/bcbb-HEAD/gff/Scripts/gff/gff_to_genbank.py   bcbb(Download)
from Bio import Seq
 
from BCBio import GFF
 
def main(gff_file, fasta_file):

src/b/c/bcbb-HEAD/gff/Scripts/gff/genbank_to_gff.py   bcbb(Download)
from Bio import Seq
 
from BCBio import GFF
 
def main(gb_file):

src/b/c/bcbb-HEAD/gff/Scripts/gff/access_gff_index.py   bcbb(Download)
from bx import interval_index_file
 
from BCBio import GFF
 
def main(gff_file):

src/e/d/edge-HEAD/src/edge/io.py   edge(Download)
from BCBio import GFF
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.SeqFeature import SeqFeature, FeatureLocation
 

src/e/d/edge-HEAD/src/edge/importer.py   edge(Download)
from django.db import connection
from BCBio import GFF
from edge.models import *
import time
 

src/b/c/bcbb-HEAD/biopython/glimmergff_to_proteins.py   bcbb(Download)
from Bio.SeqRecord import SeqRecord
 
from BCBio import GFF
 
def main(glimmer_file, ref_file):

src/c/o/CONCOCT-HEAD/scripts/evaluation/gen_input_table_taxonomy.py   CONCOCT(Download)
from Bio.SeqUtils import GC
 
from BCBio import GFF
 
TAXONOMY = ('phylum', 'class', 'order', 'family', 'genus', 'species')

src/c/o/CONCOCT-HEAD/scripts/COG_table.py   CONCOCT(Download)
# **************************************************************/
import sys
from BCBio import GFF
import argparse
from Bio import Entrez

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