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src/c/g/cgat-HEAD/CGATPipelines/pipeline_docs/pipeline_metagenomebenchmark/pipeline_metagenomebenchmark.py   cgat(Download)
import PipelineMapping
import PipelineMappingQC
import Bed
import Nucmer
import pysam

src/c/g/cgat-HEAD/obsolete/pipeline_rmaa/count_reads_in_genes.py   cgat(Download)
## part of pipeline_rmaa.py
 
import sys, optparse, itertools
import pysam
import Bed, IOTools