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src/b/i/biopython-HEAD/Bio/CodonAlign/CodonAlignment.py   biopython(Download)
    def __init__(self, records='', name=None, alphabet=default_codon_alphabet):
        MultipleSeqAlignment.__init__(self, records, alphabet=alphabet)
        # check the type of the alignment to be nucleotide

src/b/i/biocma-0.2.1/biocma/biocma.py   biocma(Download)
        # NB: alphabet is always protein; X is OK
        MultipleSeqAlignment.__init__(self, records, extended_protein)
        self.level = level
        self.name = name