Did I find the right examples for you? yes no Crawl my project Python Jobs
All Samples(6) | Call(6) | Derive(0) | Import(0)
src/b/i/biopython-HEAD/Bio/CodonAlign/CodonAlignment.py biopython(Download)
"SeqRecord in CodonAlignment") assert self.get_alignment_length() % 3 == 0, \ "Alignment length is not a triple number"
lines = ["%s CodonAlignment with %i rows and %i columns (%i codons)" % (str(self._alphabet), rows, \ self.get_alignment_length(), self.get_aln_length())] if rows <= 60:
def get_aln_length(self): return self.get_alignment_length() // 3 def toMultipleSeqAlignment(self): """Return a MultipleSeqAlignment containing all the
src/i/v/ivy-phylo-20120228/ivy/vis/tree.py ivy-phylo(Download)
aln = align.read(aln) d = dict([ (x.id,x) for x in aln ]) emptyseq = Seq('-'*aln.get_alignment_length(), alphabet=IUPAC.ambiguous_dna) aln = MultipleSeqAlignment(
src/b/i/biopython-HEAD/Tests/test_SeqIO.py biopython(Download)
assert len(alignment) == t_count alignment_len = alignment.get_alignment_length() #Check the record order agrees, and double check the
src/b/i/biopython-1.63/Tests/test_SeqIO.py biopython(Download)
assert len(alignment) == t_count alignment_len = alignment.get_alignment_length() #Check the record order agrees, and double check the