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src/b/i/biopython-1.63/Bio/Align/AlignInfo.py   biopython(Download)
            elif isinstance(a, IUPAC.IUPACProtein):
                if ambiguous in IUPAC.ExtendedIUPACProtein().letters:
                    a = IUPAC.ExtendedIUPACProtein()
                else:
                    a = Alphabet.generic_protein

src/b/i/biopython-HEAD/Bio/Align/AlignInfo.py   biopython(Download)
            elif isinstance(a, IUPAC.IUPACProtein):
                if ambiguous in IUPAC.ExtendedIUPACProtein().letters:
                    a = IUPAC.ExtendedIUPACProtein()
                else:
                    a = Alphabet.generic_protein

src/d/u/DuctApe-0.16.4/ductape/storage/SQLite/database.py   DuctApe(Download)
        for prot in self.getAllProt(org_id):
            yield SeqRecord(Seq(prot.sequence,
                                Alphabet.IUPAC.ExtendedIUPACProtein()),
                            id = prot.prot_id)