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Standard nucleotide and protein alphabets defined by IUPAC.

src/b/i/biopython-1.63/Bio/Align/AlignInfo.py   biopython(Download)
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
from Bio.SubsMat import FreqTable

src/b/i/biopython-HEAD/Bio/Align/AlignInfo.py   biopython(Download)
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
from Bio.SubsMat import FreqTable

src/b/i/biopython-HEAD/Bio/SeqUtils/__init__.py   biopython(Download)
from Bio.Seq import Seq, MutableSeq
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData
 

src/b/i/biopython-1.63/Bio/Data/CodonTable.py   biopython(Download)
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData
 

src/b/i/biopython-HEAD/Bio/Data/CodonTable.py   biopython(Download)
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData
 

src/b/i/biopython-1.63/Bio/motifs/__init__.py   biopython(Download)
    def __init__(self, instances=[], alphabet=None):
        from Bio.Alphabet import IUPAC
        from Bio.Seq import Seq
        self.length = None
        for instance in instances:
    def __init__(self, alphabet=None, instances=None, counts=None):
        from . import matrix
        from Bio.Alphabet import IUPAC
        self.name=""
        if counts is not None and instances is not None:

src/b/i/biopython-HEAD/Bio/motifs/__init__.py   biopython(Download)
    def __init__(self, instances=[], alphabet=None):
        from Bio.Alphabet import IUPAC
        from Bio.Seq import Seq
        self.length = None
        for instance in instances:
    def __init__(self, alphabet=None, instances=None, counts=None):
        from . import matrix
        from Bio.Alphabet import IUPAC
        self.name=""
        if counts is not None and instances is not None:

src/b/i/biopython-1.63/Bio/Motif/Parsers/MEME.py   biopython(Download)
from __future__ import print_function
 
from Bio.Alphabet import IUPAC
from Bio import Seq
import re

src/b/i/biopython-1.63/Bio/Motif/Parsers/MAST.py   biopython(Download)
# as part of this package.
 
from Bio.Alphabet import IUPAC
from Bio.Motif.Parsers.MEME import MEMEMotif
 

src/b/i/biopython-1.63/Bio/Motif/Parsers/AlignAce.py   biopython(Download)
 
from Bio.Motif import Motif
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
 

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