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Standard nucleotide and protein alphabets defined by IUPAC.

src/b/i/biopython-HEAD/Bio/Motif/Parsers/MEME.py   biopython(Download)
from __future__ import print_function
 
from Bio.Alphabet import IUPAC
from Bio import Seq
import re

src/b/i/biopython-HEAD/Bio/Motif/Parsers/MAST.py   biopython(Download)
# as part of this package.
 
from Bio.Alphabet import IUPAC
from Bio.Motif.Parsers.MEME import MEMEMotif
 

src/b/i/biopython-HEAD/Bio/Motif/Parsers/AlignAce.py   biopython(Download)
 
from Bio.Motif import Motif
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
 

src/b/i/biopython-1.63/Bio/SeqUtils/__init__.py   biopython(Download)
 
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData
 

src/b/i/biopython-1.63/Bio/SeqUtils/ProtParam.py   biopython(Download)
from . import IsoelectricPoint  # Local
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData
 

src/b/i/biopython-1.63/Bio/Restriction/Restriction.py   biopython(Download)
 
from Bio.Seq import Seq, MutableSeq
from Bio.Alphabet import IUPAC
 
from Bio.Restriction.Restriction_Dictionary import rest_dict as enzymedict

src/b/i/biopython-1.63/Bio/Nexus/Nexus.py   biopython(Download)
 
from Bio import File
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData
from Bio.Seq import Seq

src/b/i/biopython-1.63/Bio/motifs/transfac.py   biopython(Download)
 
from Bio import motifs
from Bio.Alphabet import IUPAC
 
 

src/b/i/biopython-1.63/Bio/motifs/meme.py   biopython(Download)
from __future__ import print_function
 
from Bio.Alphabet import IUPAC
from Bio import Seq
from Bio import motifs

src/b/i/biopython-1.63/Bio/motifs/matrix.py   biopython(Download)
 
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
 
#Hack for Python 2.5, isnan and isinf were new in Python 2.6

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