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Standard nucleotide and protein alphabets defined by IUPAC.

src/s/e/seqmagick-0.5.0/seqmagick/subcommands/convert.py   seqmagick(Download)
 
from Bio import Alphabet, SeqIO
from Bio.Alphabet import IUPAC
from Bio.SeqIO import FastaIO
from seqmagick import transform

src/w/l/wLib-1.1.0/external/Motif/Parsers/MEME.py   wLib(Download)
# as part of this package.
 
from Bio.Alphabet import IUPAC
from Bio import Seq
import re

src/w/l/wLib-1.1.0/external/Motif/Parsers/MAST.py   wLib(Download)
# as part of this package.
 
from Bio.Alphabet import IUPAC
from Bio.Motif.Parsers.MEME import MEMEMotif
 

src/w/l/wLib-1.1.0/external/Motif/Parsers/AlignAce.py   wLib(Download)
 
from Bio.Motif import Motif
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
 

src/s/e/seqmagick-HEAD/seqmagick/subcommands/convert.py   seqmagick(Download)
 
from Bio import Alphabet, SeqIO
from Bio.Alphabet import IUPAC
from Bio.SeqIO import FastaIO
from seqmagick import transform

src/g/e/Geeneus-0.1.7/geeneus/backend/ProteinParser.py   Geeneus(Download)
from Bio import Entrez
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
from xml.dom.minidom import parseString
import ProteinObject

src/g/e/Geeneus-0.1.7/geeneus/backend/ProteinObject.py   Geeneus(Download)
from Bio import Entrez, Seq
from Bio import SeqIO
from Bio.Alphabet import IUPAC
 
import string

src/g/e/Geeneus-0.1.7/geeneus/backend/Parser.py   Geeneus(Download)
from Bio import Entrez
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
 
import httplib

src/g/e/Geeneus-0.1.7/geeneus/backend/GeneParser.py   Geeneus(Download)
from Bio import Entrez
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
 
import GeneObject

src/g/e/Geeneus-0.1.7/geeneus/backend/GeneObject.py   Geeneus(Download)
from Bio import Entrez, Seq
from Bio import SeqIO
from Bio.Alphabet import IUPAC
 
# object attributes

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