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Standard nucleotide and protein alphabets defined by IUPAC.

src/i/v/ivy-phylo-20120228/ivy/vis/tree.py   ivy-phylo(Download)
        from Bio.Seq import Seq
        from Bio.SeqRecord import SeqRecord
        from Bio.Alphabet import IUPAC
        from alignment import AlignmentFigure, AlignmentPlot
        if not isinstance(aln, MultipleSeqAlignment):

src/i/v/ivy-phylo-20120228/ivy/align.py   ivy-phylo(Download)
import os
from subprocess import Popen, PIPE
from Bio import AlignIO
from Bio.Alphabet import IUPAC
from cStringIO import StringIO

src/r/n/rnaseqlib-HEAD/rnaseqlib/motif/motif_clustering.py   rnaseqlib(Download)
    """
    from Bio import Motif
    from Bio.Alphabet import IUPAC
    import Bio.Seq as bio_seq
    import Bio.AlignIO as align_io

src/b/i/BioGraPy-HEAD/src/biograpy/seqrecord.py   BioGraPy(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.Alphabet import IUPAC
 
from biograpy.drawer import Panel

src/f/a/fastools-0.9.0/fastools/fastools.py   fastools(Download)
import Levenshtein
from Bio import Seq, SeqIO, Entrez, pairwise2, Restriction
from Bio.Alphabet import IUPAC
from Bio.SeqRecord import SeqRecord
 

src/c/g/CGAT-0.2.0/CGAT/SequenceProperties.py   CGAT(Download)
import IOTools
 
import Bio.Alphabet.IUPAC
 
class SequenceProperties(object):

src/m/s/msg-HEAD/extract-ref-alleles.py   msg(Download)
from Bio.Seq import Seq
from Bio import SeqIO
from Bio.Alphabet import IUPAC
import pysam
from itertools import *

src/b/i/biopython-HEAD/Tests/test_translate.py   biopython(Download)
from Bio import Seq
from Bio import Alphabet
from Bio.Alphabet import IUPAC
 
# First, test the transcription functions

src/b/i/biopython-HEAD/Tests/test_seq.py   biopython(Download)
import sys
from Bio import Seq
from Bio.Alphabet import IUPAC
from Bio import Alphabet
from Bio.Data.IUPACData import ambiguous_dna_complement, ambiguous_rna_complement

src/b/i/biopython-HEAD/Tests/test_NNGene.py   biopython(Download)
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
 
# stuff we are testing

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