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Standard nucleotide and protein alphabets defined by IUPAC.

src/b/i/biopython-HEAD/Tests/test_NCBITextParser.py   biopython(Download)
    def test_conversion(self):
        "Test converting a Blast record multiple alignment"
 
        from Bio.Alphabet import IUPAC
 

src/b/i/biopython-HEAD/Tests/test_motifs.py   biopython(Download)
import unittest
 
from Bio.Alphabet import IUPAC
from Bio import motifs
from Bio.motifs.matrix import _isnan

src/b/i/biopython-HEAD/Tests/test_Motif.py   biopython(Download)
    from Bio import Motif
 
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq
 

src/b/i/biopython-HEAD/Tests/test_CodonAlign.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.Alphabet import IUPAC
from Bio.Align import MultipleSeqAlignment
 

src/b/i/biopython-HEAD/Tests/test_align.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio.Alphabet import IUPAC
from Bio.Align import AlignInfo
from Bio import AlignIO

src/b/i/biopython-1.63/Tests/test_translate.py   biopython(Download)
from Bio import Seq
from Bio import Alphabet
from Bio.Alphabet import IUPAC
 
# First, test the transcription functions

src/b/i/biopython-1.63/Tests/test_seq.py   biopython(Download)
import sys
from Bio import Seq
from Bio.Alphabet import IUPAC
from Bio import Alphabet
from Bio.Data.IUPACData import ambiguous_dna_complement, ambiguous_rna_complement

src/b/i/biopython-1.63/Tests/test_NNGene.py   biopython(Download)
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC
 
# stuff we are testing

src/b/i/biopython-1.63/Tests/test_NCBITextParser.py   biopython(Download)
    def test_conversion(self):
        "Test converting a Blast record multiple alignment"
 
        from Bio.Alphabet import IUPAC
 

src/b/i/biopython-1.63/Tests/test_motifs.py   biopython(Download)
import unittest
 
from Bio.Alphabet import IUPAC
from Bio import motifs
from Bio.motifs.matrix import _isnan

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