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src/b/i/biopython-HEAD/Bio/CodonAlign/CodonAlphabet.py   biopython(Download)
    alphabet is incompatible.
    """
    from Bio.Alphabet import NucleotideAlphabet
    if isinstance(alphabet, NucleotideAlphabet):
        alpha = alphabet

src/b/i/biopython-HEAD/Bio/Data/CodonTable.py   biopython(Download)
    _merged_values["T"] = "U"
    ambig_generic = AmbiguousCodonTable(generic,
                                        Alphabet.NucleotideAlphabet(),
                                        _merged_values,
                                        IUPAC.extended_protein,

src/b/i/biopython-HEAD/Bio/CodonAlign/__init__.py   biopython(Download)
    """
    import re
    from Bio.Alphabet import NucleotideAlphabet
 
    if not all([isinstance(pro, SeqRecord), isinstance(nucl, SeqRecord)]):

src/b/i/biopython-1.63/Bio/Data/CodonTable.py   biopython(Download)
    _merged_values["T"] = "U"
    ambig_generic = AmbiguousCodonTable(generic,
                                        Alphabet.NucleotideAlphabet(),
                                        _merged_values,
                                        IUPAC.extended_protein,

src/p/y/pytools-HEAD/SeqRecordLite.py   pytools(Download)
from Bio.SeqRecord import SeqRecord
from Bio.SeqFeature import SeqFeature, FeatureLocation
from Bio.Alphabet import NucleotideAlphabet
 
 
    def __init__(self, biopython_object=None):
 
        # first we define our underlying SeqRecord object
        if biopython_object == None:
            self._record = SeqRecord(seq=UnknownSeq(0,alphabet=NucleotideAlphabet()),id='',name='',description='')