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Alphabets used in Seq objects etc to declare sequence type and letters.

This is used by sequences which contain a finite number of similar words.

src/b/i/biopython-1.63/BioSQL/BioSeq.py   biopython(Download)
from Bio._py3k import unicode
 
from Bio import Alphabet
from Bio.Seq import Seq, UnknownSeq
from Bio.SeqRecord import SeqRecord, _RestrictedDict

src/b/i/biopython-HEAD/Bio/Phylo/PhyloXML.py   biopython(Download)
from Bio._py3k import basestring
 
from Bio import Alphabet
from Bio.Align import MultipleSeqAlignment
from Bio.Seq import Seq

src/b/i/biopython-HEAD/BioSQL/Loader.py   biopython(Download)
 
# biopython
from Bio import Alphabet
from Bio.SeqUtils.CheckSum import crc64
from Bio import Entrez

src/b/i/biopython-HEAD/BioSQL/BioSeq.py   biopython(Download)
from Bio._py3k import unicode
 
from Bio import Alphabet
from Bio.Seq import Seq, UnknownSeq
from Bio.SeqRecord import SeqRecord, _RestrictedDict

src/b/i/biopython-1.63/Scripts/xbbtools/nextorf.py   biopython(Download)
from Bio import SeqIO
from Bio.Seq import Seq
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData, CodonTable

src/b/i/biopython-1.63/Bio/FSSP/FSSPTools.py   biopython(Download)
import copy
from Bio.Align import Generic
from Bio import Alphabet
 
 

src/b/i/biopython-HEAD/Scripts/xbbtools/nextorf.py   biopython(Download)
from Bio import SeqIO
from Bio.Seq import Seq
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData, CodonTable

src/b/i/biopython-HEAD/Bio/FSSP/FSSPTools.py   biopython(Download)
import copy
from Bio.Align import MultipleSeqAlignment
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

src/b/i/biopython-HEAD/Bio/SeqIO/SffIO.py   biopython(Download)
 
from Bio.SeqIO.Interfaces import SequenceWriter
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

src/b/i/biopython-1.63/Bio/SeqIO/SffIO.py   biopython(Download)
 
from Bio.SeqIO.Interfaces import SequenceWriter
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

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