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Alphabets used in Seq objects etc to declare sequence type and letters.

This is used by sequences which contain a finite number of similar words.

src/b/i/biopython-1.63/Bio/GenBank/__init__.py   biopython(Download)
    def record_end(self, content):
        """Clean up when we've finished the record.
        """
        from Bio import Alphabet
        from Bio.Alphabet import IUPAC

src/b/i/biopython-HEAD/Bio/GenBank/__init__.py   biopython(Download)
    def record_end(self, content):
        """Clean up when we've finished the record.
        """
        from Bio import Alphabet
        from Bio.Alphabet import IUPAC

src/s/s/SSuMMo-0.3/lib/simulate_lengths.py   SSuMMo(Download)
import multiprocessing
import CONFIG
from Bio import SeqIO, SeqRecord, Seq, Alphabet
try:
    import SSUMMOv06 as SSUMMO ## needs to be maintained!!

src/b/i/biopython-HEAD/Bio/Seq.py   biopython(Download)
from Bio._py3k import basestring
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data.IUPACData import ambiguous_dna_complement, ambiguous_rna_complement

src/s/e/seqmagick-0.5.0/seqmagick/subcommands/primer_trim.py   seqmagick(Download)
import sys
 
from Bio import Alphabet, SeqIO, pairwise2
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq

src/s/e/seqmagick-HEAD/seqmagick/subcommands/primer_trim.py   seqmagick(Download)
import sys
 
from Bio import Alphabet, SeqIO, pairwise2
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq

src/b/i/biopython-1.63/Bio/SeqIO/SeqXmlIO.py   biopython(Download)
from Bio._py3k import basestring
 
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.Seq import UnknownSeq

src/b/i/biopython-1.63/Bio/Align/__init__.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio import Alphabet
 
#We only import this and subclass it for some limited backward compatibility.

src/b/i/biopython-1.63/Bio/Align/Generic.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio import Alphabet
 
 

src/b/i/biopython-1.63/Bio/Align/AlignInfo.py   biopython(Download)
import sys
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq

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