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Alphabets used in Seq objects etc to declare sequence type and letters.

This is used by sequences which contain a finite number of similar words.

src/b/i/biopython-HEAD/Bio/SeqUtils/__init__.py   biopython(Download)
 
from Bio.Seq import Seq, MutableSeq
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData

src/b/i/biopython-HEAD/Bio/SeqIO/SeqXmlIO.py   biopython(Download)
from Bio._py3k import basestring
 
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.Seq import UnknownSeq

src/b/i/biopython-HEAD/Bio/Align/__init__.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio import Alphabet
 
#We only import this and subclass it for some limited backward compatibility.

src/b/i/biopython-HEAD/Bio/Align/Generic.py   biopython(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio import Alphabet
 
 

src/b/i/biopython-HEAD/Bio/Align/AlignInfo.py   biopython(Download)
import sys
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Seq import Seq

src/b/i/biopython-1.63/Bio/Seq.py   biopython(Download)
from Bio._py3k import basestring
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data.IUPACData import ambiguous_dna_complement, ambiguous_rna_complement

src/m/d/MDAnalysis-0.8.1/MDAnalysis/analysis/align.py   MDAnalysis(Download)
          ``select=select_dict``.
    """
    import Bio.SeqIO, Bio.AlignIO, Bio.Alphabet
    import numpy
 

src/b/i/biopython-1.63/Bio/NeuralNetwork/Gene/Schema.py   biopython(Download)
from Bio._py3k import range
 
from Bio import Alphabet
from Bio.Seq import MutableSeq
 

src/b/i/biopython-HEAD/Bio/NeuralNetwork/Gene/Schema.py   biopython(Download)
from Bio._py3k import range
 
from Bio import Alphabet
from Bio.Seq import MutableSeq
 

src/b/i/biopython-1.63/Bio/SubsMat/__init__.py   biopython(Download)
# BioPython imports
import Bio
from Bio import Alphabet
from Bio.SubsMat import FreqTable
 

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