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Alphabets used in Seq objects etc to declare sequence type and letters.

This is used by sequences which contain a finite number of similar words.

src/b/i/biopython-1.63/Bio/SubsMat/FreqTable.py   biopython(Download)
#
 
from Bio import Alphabet
COUNT = 1
FREQ = 2

src/b/i/biopython-1.63/Bio/SeqIO/AbiIO.py   biopython(Download)
from os.path import basename
 
from Bio import Alphabet
from Bio.Alphabet.IUPAC import ambiguous_dna, unambiguous_dna
from Bio.Seq import Seq

src/b/i/biopython-1.63/Bio/FSSP/__init__.py   biopython(Download)
from . import fssp_rec
from Bio.Align import Generic
from Bio import Alphabet
fff_rec = fssp_rec.fff_rec
header_records = {

src/b/i/biopython-1.63/Bio/Data/CodonTable.py   biopython(Download)
from __future__ import print_function
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData

src/b/i/biopython-1.63/Bio/Alphabet/Reduced.py   biopython(Download)
"""
 
from Bio import Alphabet
 
 

src/b/i/biopython-1.63/Bio/Alphabet/IUPAC.py   biopython(Download)
"""Standard nucleotide and protein alphabets defined by IUPAC."""
 
from Bio import Alphabet
from Bio.Data import IUPACData
 

src/b/i/biopython-1.63/Bio/AlignIO/NexusIO.py   biopython(Download)
from Bio.Align import MultipleSeqAlignment
from .Interfaces import AlignmentWriter
from Bio import Alphabet
 
#You can get a couple of example files here:

src/b/i/biopython-HEAD/Bio/SubsMat/__init__.py   biopython(Download)
# BioPython imports
import Bio
from Bio import Alphabet
from Bio.SubsMat import FreqTable
 

src/b/i/biopython-HEAD/Bio/SubsMat/FreqTable.py   biopython(Download)
#
 
from Bio import Alphabet
COUNT = 1
FREQ = 2

src/b/i/biopython-HEAD/Bio/SeqIO/AbiIO.py   biopython(Download)
from os.path import basename
 
from Bio import Alphabet
from Bio.Alphabet.IUPAC import ambiguous_dna, unambiguous_dna
from Bio.Seq import Seq

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