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Alphabets used in Seq objects etc to declare sequence type and letters.

This is used by sequences which contain a finite number of similar words.

src/b/i/biopython-HEAD/Bio/FSSP/__init__.py   biopython(Download)
from . import fssp_rec
from Bio.Align import Generic
from Bio import Alphabet
fff_rec = fssp_rec.fff_rec
header_records = {

src/b/i/biopython-HEAD/Bio/Data/CodonTable.py   biopython(Download)
from __future__ import print_function
 
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData

src/b/i/biopython-HEAD/Bio/Alphabet/Reduced.py   biopython(Download)
"""
 
from Bio import Alphabet
 
 

src/b/i/biopython-HEAD/Bio/Alphabet/IUPAC.py   biopython(Download)
"""Standard nucleotide and protein alphabets defined by IUPAC."""
 
from Bio import Alphabet
from Bio.Data import IUPACData
 

src/b/i/biopython-HEAD/Bio/AlignIO/NexusIO.py   biopython(Download)
from Bio.Align import MultipleSeqAlignment
from .Interfaces import AlignmentWriter
from Bio import Alphabet
 
#You can get a couple of example files here:

src/s/e/seqmagick-0.5.0/seqmagick/subcommands/convert.py   seqmagick(Download)
import logging
 
from Bio import Alphabet, SeqIO
from Bio.Alphabet import IUPAC
from Bio.SeqIO import FastaIO

src/s/e/seqmagick-HEAD/seqmagick/subcommands/convert.py   seqmagick(Download)
import logging
 
from Bio import Alphabet, SeqIO
from Bio.Alphabet import IUPAC
from Bio.SeqIO import FastaIO

src/p/y/python-dna-0.1.2/pydna/dsdna.py   python-dna(Download)
import warnings
 
from Bio                    import Alphabet
from Bio                    import SeqIO
from Bio.Alphabet.IUPAC     import IUPACAmbiguousDNA

src/p/y/pydna-0.6.1/pydna/dsdna.py   pydna(Download)
 
 
from Bio                    import Alphabet
from Bio                    import SeqIO
from Bio.Alphabet.IUPAC     import IUPACAmbiguousDNA

src/p/y/pytools-HEAD/seqtools.py   pytools(Download)
import itertools
 
from Bio            import Alphabet
from Bio.Seq        import Seq
from Bio.SeqRecord  import SeqRecord

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