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Alphabets used in Seq objects etc to declare sequence type and letters.

This is used by sequences which contain a finite number of similar words.

src/d/u/DuctApe-0.16.4/ductape/storage/SQLite/database.py   DuctApe(Download)
        As SeqRecords objects
        '''
        from Bio import Alphabet
        from Bio.Seq import Seq
        from Bio.SeqRecord import SeqRecord

src/c/g/cgat-HEAD/CGAT/Genomics.py   cgat(Download)
 
from CGAT import AString as AString
import Bio.Alphabet
 
# For caching genome files: remember last one read

src/b/i/biosqlweb-HEAD/app/lib/python/BioSQL/GAE/Loader.py   biosqlweb(Download)
"""Load biopython objects into a BioSQL Google App Engine datastore.
"""
from google.appengine.ext import db
 
from Bio import Alphabet

src/b/i/bioscripts.convert-0.4/bioscripts/convert/defs.py   bioscripts.convert(Download)
### IMPORTS ###
 
from Bio import (Alphabet)
from Bio.Alphabet import (IUPAC)
from Bio.Data import (IUPACData)

src/c/g/CGAT-0.2.0/CGAT/Genomics.py   CGAT(Download)
 
import AString
import Bio.Alphabet
 
## For caching genome files: remember last one read

src/p/y/PySang-0.3.2/pysang/parser.py   PySang(Download)
from os.path import basename
 
from Bio import Alphabet
from Bio.Alphabet.IUPAC import ambiguous_dna, unambiguous_dna
from Bio.Seq import Seq

src/s/e/seqmagick-HEAD/seqmagick/test/test_transform.py   seqmagick(Download)
import unittest
 
from Bio import Alphabet, SeqIO
from Bio.SeqRecord import SeqRecord
from Bio.Seq import Seq

src/s/e/seqmagick-HEAD/seqmagick/test/test_primer_trim.py   seqmagick(Download)
import unittest
 
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

src/b/i/biopython-HEAD/Tests/test_translate.py   biopython(Download)
 
from Bio import Seq
from Bio import Alphabet
from Bio.Alphabet import IUPAC
 

src/b/i/biopython-HEAD/Tests/test_SeqIO_write.py   biopython(Download)
from Bio.SeqRecord import SeqRecord
from Bio.Seq import Seq, UnknownSeq
from Bio import Alphabet
from Bio.Align import MultipleSeqAlignment
 

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