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Alphabets used in Seq objects etc to declare sequence type and letters.

This is used by sequences which contain a finite number of similar words.

src/b/i/biopython-HEAD/Tests/test_SeqIO.py   biopython(Download)
from Bio.SeqRecord import SeqRecord
from Bio.Seq import Seq, UnknownSeq
from Bio import Alphabet
from Bio.Align import MultipleSeqAlignment
 

src/b/i/biopython-HEAD/Tests/test_seq.py   biopython(Download)
from Bio import Seq
from Bio.Alphabet import IUPAC
from Bio import Alphabet
from Bio.Data.IUPACData import ambiguous_dna_complement, ambiguous_rna_complement
from Bio.Data.IUPACData import ambiguous_dna_values, ambiguous_rna_values

src/b/i/biopython-HEAD/Tests/test_PhyloXML.py   biopython(Download)
from itertools import chain
 
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

src/b/i/biopython-HEAD/Tests/test_HMMGeneral.py   biopython(Download)
 
# biopython
from Bio import Alphabet
from Bio.Seq import Seq
 

src/b/i/biopython-HEAD/Tests/test_HMMCasino.py   biopython(Download)
 
# biopython
from Bio import Alphabet
from Bio.Seq import MutableSeq
from Bio.Seq import Seq

src/b/i/biopython-HEAD/Tests/test_GAQueens.py   biopython(Download)
 
# Biopython
from Bio import Alphabet
 
# Genetic Algorithm stuff

src/b/i/biopython-HEAD/Tests/test_GAOrganism.py   biopython(Download)
 
# Biopython
from Bio import Alphabet
from Bio.Seq import MutableSeq
 

src/b/i/biopython-HEAD/Tests/test_CAPS.py   biopython(Download)
from Bio import CAPS
from Bio.Restriction import EcoRI, AluI
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

src/b/i/biopython-HEAD/Tests/test_align.py   biopython(Download)
 
# biopython
from Bio import Alphabet
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

src/b/i/biopython-HEAD/Tests/common_BioSQL.py   biopython(Download)
from Bio.Seq import Seq, MutableSeq
from Bio.SeqFeature import SeqFeature
from Bio import Alphabet
from Bio import SeqIO
from Bio.SeqRecord import SeqRecord

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