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src/b/i/biopython-HEAD/Bio/Sequencing/Applications/_samtools.py   biopython(Download)
__docformat__ = "epytext en"
from Bio.Application import _Option, _Argument, _Switch
from Bio.Application import AbstractCommandline, _ArgumentList
from Bio.Application import _StaticArgument
 
                    equate=False,
                    checker_function=lambda x: isinstance(x, str)),
            _ArgumentList(["input_file"],
                          "Input File for generating mpileup",
                          filename=True, is_required=True),
                    filename=True, equate=False,
                    checker_function=lambda x: isinstance(x, str)),
            _ArgumentList(["input", "input_bam", "bams"], "Input BAM files",
                          filename=True, is_required=True)
 
                      "Output BAM file",
                      filename=True, is_required=True),
            _ArgumentList(["input_bam", "in_bam", "input", "bam"],
                          "Input BAM",
                          filename=True, is_required=True),