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src/g/i/giraffe-2.0/src/giraffe/features.py   giraffe(Download)
 
 
from Bio.Blast.Applications import NcbiblastnCommandline, NcbiblastxCommandline
from Bio.Blast import NCBIXML
import tempfile
  outfile = "%s.out.xml" % (infile,)
  if protein:
    blast_cl = NcbiblastxCommandline(query=infile, db="%s" % (dbobj.protein_db_name(),),
                                     evalue=evalue_threshold, word_size=3, outfmt=5, out=outfile)
  else: