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Bio.CodonAlign.chisq.chisqprob

All Samples(2)  |  Call(1)  |  Derive(0)  |  Import(1)


src/b/i/biopython-HEAD/Bio/CodonAlign/CodonAlignment.py   biopython(Download)
from Bio.CodonAlign.CodonAlphabet import default_codon_table, default_codon_alphabet
from Bio.CodonAlign.CodonSeq import _get_codon_list, CodonSeq, cal_dn_ds
from Bio.CodonAlign.chisq import chisqprob
 
class CodonAlignment(MultipleSeqAlignment):

    G *= 2
    #return 1-chi2.cdf(G, 1) # only 1 dof for 2x2 table
    return chisqprob(G, 1)