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Codon tables based on those from the NCBI.

These tables are based on parsing the NCBI file:
ftp://ftp.ncbi.nih.gov/entrez/misc/data/gc.prt

Last updated for Version 3.9

src/b/i/biopython-1.63/Scripts/xbbtools/nextorf.py   biopython(Download)
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData, CodonTable
 
 

src/b/i/biopython-HEAD/Scripts/xbbtools/nextorf.py   biopython(Download)
from Bio import Alphabet
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData, CodonTable
 
 

src/b/i/biopython-1.63/Scripts/xbbtools/xbb_widget.py   biopython(Download)
from xbb_search import XDNAsearch
from xbb_help import xbbtools_help
from Bio.Data import CodonTable
from Bio.SeqIO.FastaIO import SimpleFastaParser
 

src/b/i/biopython-HEAD/Scripts/xbbtools/xbb_widget.py   biopython(Download)
from xbb_search import XDNAsearch
from xbb_help import xbbtools_help
from Bio.Data import CodonTable
from Bio.SeqIO.FastaIO import SimpleFastaParser
 

src/b/i/biopython-1.63/Bio/Seq.py   biopython(Download)
from Bio.Alphabet import IUPAC
from Bio.Data.IUPACData import ambiguous_dna_complement, ambiguous_rna_complement
from Bio.Data import CodonTable
 
 

src/b/i/biopython-HEAD/Bio/Seq.py   biopython(Download)
from Bio.Alphabet import IUPAC
from Bio.Data.IUPACData import ambiguous_dna_complement, ambiguous_rna_complement
from Bio.Data import CodonTable
 
 

src/s/e/seqmagick-0.5.0/seqmagick/subcommands/backtrans_align.py   seqmagick(Download)
 
from Bio import SeqIO
from Bio.Data import CodonTable
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord

src/c/g/cgat-HEAD/scripts/mali2kaks.py   cgat(Download)
        from XGram.Model import Annotation
        import XGram.Run
        import Bio.Data.CodonTable
 
        # paml like estimation using xrate

src/c/g/cgat-HEAD/obsolete/xrate_tms.py   cgat(Download)
from XGram.Model import Annotation
import XGram.Run
import Bio.Data.CodonTable
 
##-----------------------------------------------------------------------------------

src/c/g/cgat-HEAD/obsolete/xrate_blocks.py   cgat(Download)
from XGram.Model import Annotation
import XGram.Run
import Bio.Data.CodonTable
 
##-----------------------------------------------------------------------------------

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