Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(9)  |  Call(6)  |  Derive(0)  |  Import(3)

src/b/i/biopython-HEAD/Scripts/xbbtools/nextorf.py   biopython(Download)
def makeTableX(table):
    assert table.protein_alphabet == IUPAC.extended_protein
    return CodonTable.CodonTable(table.nucleotide_alphabet, proteinX,
                                MissingTable(table.forward_table),
                                table.back_table, table.start_codons,

src/b/i/biopython-1.63/Scripts/xbbtools/nextorf.py   biopython(Download)
def makeTableX(table):
    assert table.protein_alphabet == IUPAC.extended_protein
    return CodonTable.CodonTable(table.nucleotide_alphabet, proteinX,
                                MissingTable(table.forward_table),
                                table.back_table, table.start_codons,

src/b/i/biopython-HEAD/Tests/test_Seq_objs.py   biopython(Download)
from Bio.Data.IUPACData import ambiguous_dna_values, ambiguous_rna_values
from Bio.Seq import Seq, UnknownSeq, MutableSeq, translate
from Bio.Data.CodonTable import TranslationError, CodonTable
 
#This is just the standard table with less stop codons
#(replaced with coding for O as an artifical example)
special_table = CodonTable(forward_table={
    stop_codons=['TAG'])
 
Chilodonella_uncinata_table = CodonTable(forward_table={
    'TTT': 'F', 'TTC': 'F', 'TTA': 'L', 'TTG': 'L',
    'TCT': 'S', 'TCC': 'S', 'TCA': 'S', 'TCG': 'S',

src/b/i/biopython-1.63/Tests/test_Seq_objs.py   biopython(Download)
from Bio.Data.IUPACData import ambiguous_dna_values, ambiguous_rna_values
from Bio.Seq import Seq, UnknownSeq, MutableSeq, translate
from Bio.Data.CodonTable import TranslationError, CodonTable
 
#This is just the standard table with less stop codons
#(replaced with coding for O as an artifical example)
special_table = CodonTable(forward_table={
    stop_codons=['TAG'])
 
Chilodonella_uncinata_table = CodonTable(forward_table={
    'TTT': 'F', 'TTC': 'F', 'TTA': 'L', 'TTG': 'L',
    'TCT': 'S', 'TCC': 'S', 'TCA': 'S', 'TCG': 'S',

src/b/i/biopython-HEAD/Bio/CodonAlign/__init__.py   biopython(Download)
 
    """
    from Bio.Data.CodonTable import CodonTable
    if not isinstance(codon_table, CodonTable):
        raise TypeError("Input table is not a instance of "