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src/b/i/biopython-1.63/Tests/test_EmbossPhylipNew.py   biopython(Download)
from Bio.Emboss.Applications import FSeqBootCommandline, FProtDistCommandline
from Bio.Emboss.Applications import FProtParsCommandline, FConsenseCommandline
from Bio.Emboss.Applications import FTreeDistCommandline, FDNAParsCommandline
 
#Try to avoid problems when the OS is in another language
    def parsimony_tree(self, filename, format, DNA=True):
        """Estimate a parsimony tree from an alignment"""
        self.assertTrue(os.path.isfile(filename), "Missing %s" % filename)
        if DNA:
            cline = FDNAParsCommandline(exes["fdnapars"],

src/b/i/biopython-HEAD/Tests/test_EmbossPhylipNew.py   biopython(Download)
from Bio.Emboss.Applications import FSeqBootCommandline, FProtDistCommandline
from Bio.Emboss.Applications import FProtParsCommandline, FConsenseCommandline
from Bio.Emboss.Applications import FTreeDistCommandline, FDNAParsCommandline
 
#Try to avoid problems when the OS is in another language
    def parsimony_tree(self, filename, format, DNA=True):
        """Estimate a parsimony tree from an alignment"""
        self.assertTrue(os.path.isfile(filename), "Missing %s" % filename)
        if DNA:
            cline = FDNAParsCommandline(exes["fdnapars"],