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Bio.Emboss.Applications.FProtDistCommandline

All Samples(6)  |  Call(4)  |  Derive(0)  |  Import(2)


src/b/i/biopython-1.63/Tests/test_EmbossPhylipNew.py   biopython(Download)
 
from Bio.Emboss.Applications import FDNADistCommandline, FNeighborCommandline
from Bio.Emboss.Applications import FSeqBootCommandline, FProtDistCommandline
from Bio.Emboss.Applications import FProtParsCommandline, FConsenseCommandline
from Bio.Emboss.Applications import FTreeDistCommandline, FDNAParsCommandline

                                         auto = True)
        else:
            cline = FProtDistCommandline(exes["fprotdist"],
                                         method = 'j',
                                         sequence= filename,
                                         outfile = "test_file",
                                         auto = True)
        stdout, strerr = cline()


src/b/i/biopython-HEAD/Tests/test_EmbossPhylipNew.py   biopython(Download)
 
from Bio.Emboss.Applications import FDNADistCommandline, FNeighborCommandline
from Bio.Emboss.Applications import FSeqBootCommandline, FProtDistCommandline
from Bio.Emboss.Applications import FProtParsCommandline, FConsenseCommandline
from Bio.Emboss.Applications import FTreeDistCommandline, FDNAParsCommandline

                                         auto = True)
        else:
            cline = FProtDistCommandline(exes["fprotdist"],
                                         method = 'j',
                                         sequence= filename,
                                         outfile = "test_file",
                                         auto = True)
        stdout, strerr = cline()