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src/b/i/biopython-1.63/Tests/test_Emboss.py   biopython(Download)
 
from Bio.Emboss.Applications import WaterCommandline, NeedleCommandline
from Bio.Emboss.Applications import SeqretCommandline, SeqmatchallCommandline
from Bio import SeqIO
from Bio import AlignIO
    def test_seqtmatchall_piped(self):
        """seqmatchall with pair output piped to stdout."""
        cline = SeqmatchallCommandline(cmd=exes["seqmatchall"],
                                       sequence="Fasta/f002",
                                       aformat="pair", wordsize=9,

src/b/i/biopython-HEAD/Tests/test_Emboss.py   biopython(Download)
 
from Bio.Emboss.Applications import WaterCommandline, NeedleCommandline
from Bio.Emboss.Applications import SeqretCommandline, SeqmatchallCommandline
from Bio import SeqIO
from Bio import AlignIO
    def test_seqtmatchall_piped(self):
        """seqmatchall with pair output piped to stdout."""
        cline = SeqmatchallCommandline(cmd=exes["seqmatchall"],
                                       sequence="Fasta/f002",
                                       aformat="pair", wordsize=9,