Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(8)  |  Call(6)  |  Derive(0)  |  Import(2)

src/b/i/biopython-1.63/Tests/test_Emboss.py   biopython(Download)
 
from Bio.Emboss.Applications import WaterCommandline, NeedleCommandline
from Bio.Emboss.Applications import SeqretCommandline, SeqmatchallCommandline
from Bio import SeqIO
from Bio import AlignIO
def emboss_convert(filename, old_format, new_format):
    """Run seqret, returns handle."""
    #Setup, this assumes for all the format names used
    #Biopython and EMBOSS names are consistent!
    cline = SeqretCommandline(exes["seqret"],
def emboss_piped_SeqIO_convert(records, old_format, new_format):
    """Run seqret, returns records (as a generator)."""
    #Setup, this assumes for all the format names used
    #Biopython and EMBOSS names are consistent!
    cline = SeqretCommandline(exes["seqret"],
def emboss_piped_AlignIO_convert(alignments, old_format, new_format):
    """Run seqret, returns alignments (as a generator)."""
    #Setup, this assumes for all the format names used
    #Biopython and EMBOSS names are consistent!
    cline = SeqretCommandline(exes["seqret"],

src/b/i/biopython-HEAD/Tests/test_Emboss.py   biopython(Download)
 
from Bio.Emboss.Applications import WaterCommandline, NeedleCommandline
from Bio.Emboss.Applications import SeqretCommandline, SeqmatchallCommandline
from Bio import SeqIO
from Bio import AlignIO
def emboss_convert(filename, old_format, new_format):
    """Run seqret, returns handle."""
    #Setup, this assumes for all the format names used
    #Biopython and EMBOSS names are consistent!
    cline = SeqretCommandline(exes["seqret"],
def emboss_piped_SeqIO_convert(records, old_format, new_format):
    """Run seqret, returns records (as a generator)."""
    #Setup, this assumes for all the format names used
    #Biopython and EMBOSS names are consistent!
    cline = SeqretCommandline(exes["seqret"],
def emboss_piped_AlignIO_convert(alignments, old_format, new_format):
    """Run seqret, returns alignments (as a generator)."""
    #Setup, this assumes for all the format names used
    #Biopython and EMBOSS names are consistent!
    cline = SeqretCommandline(exes["seqret"],