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src/b/i/biopython-1.63/Tests/test_Emboss.py   biopython(Download)
                                 gapopen="10", gapextend="0.5")
        #Try using both human readable names, and the literal ones:
        cline.set_parameter("asequence", "asis:ACCCGGGCGCGGT")
        cline.set_parameter("-bsequence", "asis:ACCCGAGCGCGGT")
        #Try using a property set here:
            os.remove(out_file)
        cline = WaterCommandline(cmd=exes["water"])
        cline.set_parameter("-asequence", "asis:%s" % query)
        cline.set_parameter("-bsequence", in_file)
        cline.set_parameter("-gapopen", "10")

src/b/i/biopython-HEAD/Tests/test_Emboss.py   biopython(Download)
                                 gapopen="10", gapextend="0.5")
        #Try using both human readable names, and the literal ones:
        cline.set_parameter("asequence", "asis:ACCCGGGCGCGGT")
        cline.set_parameter("-bsequence", "asis:ACCCGAGCGCGGT")
        #Try using a property set here:
            os.remove(out_file)
        cline = WaterCommandline(cmd=exes["water"])
        cline.set_parameter("-asequence", "asis:%s" % query)
        cline.set_parameter("-bsequence", in_file)
        cline.set_parameter("-gapopen", "10")