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src/i/v/ivy-phylo-20120228/ivy/genbank.py   ivy-phylo(Download)
def gi2tax(gi):
    global email
    assert email, "set email!"
    Entrez.email = email
    h = Entrez.elink(dbfrom='taxonomy', db='nucleotide', from_uid=gi,

src/d/e/denigma-HEAD/denigma/library.py   denigma(Download)
    def related(self, top=5):
        """Retrieves related references, but does not add them."""
        self.relations = []
        record = Entrez.read(Entrez.elink(dbfrom="pubmed", id=self.pmid))
        #print record
    def cited(self, top=5):
        """Retrieves publiction which cite this reference."""
        self.citations = []
        pmcids = Entrez.read(Entrez.elink(dbfrom="pubmed", db="pmc",
                                           LinkName="pubmed_pmc_refs",
                                           from_uid=self.pmid))
        pmcids = [i.values()[0] for i in pmcids[0]['LinkSetDb'][0]['Link'][:top]] #.values() #[:5]
        pmids = Entrez.read(Entrez.elink(dbfrom="pmc", db="pubmed",

src/c/g/cgat-HEAD/scripts/ena2table.py   cgat(Download)
 
            for uid in uids:
                record = Entrez.read(Entrez.elink(dbfrom="gds",
                                                  dbto="pubmed",
                                                  id=uid))

src/b/c/bcbb-HEAD/classify/pubmed_related_group.py   bcbb(Download)
        pmid_related = {}
        for pmid in pmids:
            handle = Entrez.elink(dbform='pubmed', db='pubmed', id=pmid)
            record = Entrez.read(handle)
            cur_ids = []

src/b/i/biopython-HEAD/Tests/test_Entrez_online.py   biopython(Download)
    def test_webenv_search(self):
        """Test Entrez.search from link webenv history"""
        elink = Entrez.elink(db='nucleotide', dbfrom='protein',
                id='22347800,48526535', webenv=None, query_key=None,
                cmd='neighbor_history')