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src/m/g/mgtaxa-HEAD/MGT/Entrez.py   mgtaxa(Download)
    def summary(self,ids,**kw):
        res = self.post(ids)
        webenv = res["WebEnv"]
        query_key = res["QueryKey"]
        net_handle = Entrez.esummary(db=self.db,

src/p/h/phyloGenerator-HEAD/phyloGenerator.py   phyloGenerator(Download)
def eSummary(seqID):
    finished = 0
    while finished <= maxCheck:
        try:
            handle = Entrez.esummary(db="nucleotide", id=seqID, retmode="text")

src/c/l/clusterDbAnalysis-HEAD/scripts/downloadGenbankFromNCBI.py   clusterDbAnalysis(Download)
def accession_to_strainID(accession, return_nucID = True):
    nucID  = accessionID_to_genbankIDs(accession)
    strainIDs=[]
    summaries = Entrez.read(Entrez.esummary(db="nucleotide", id=nucID))
    for s in summaries:

src/d/e/denigma-HEAD/denigma/apps/datasets/models.py   denigma(Download)
    def fetch_data(self):
        """Queries Entrez EUtils to retrieve information on a reference."""
        if self.pmid:
          try:
            handle = Entrez.esummary(db="pubmed", id=self.pmid)

src/d/e/denigma-HEAD/denigma/apps/experts/templatetags/publications.py   denigma(Download)
    r = Entrez.read(Entrez.esearch(db='pubmed', term=name))
    if r['IdList']:
        records = Entrez.read(Entrez.esummary(db="pubmed", id=",".join(r['IdList'])))
        for r in records:
            results[int(r['Id'])] = r['Title']

src/g/e/genotyping_23andme-HEAD/pubmed_crawler.py   genotyping_23andme(Download)
				for single_paper in results["IdList"]:
					try:
						summary_handle = Entrez.esummary(db="pubmed", id=single_paper)	 #Get summary
						summary = Entrez.read(summary_handle)
						if updated_on == "" or updated_on < datetime.datetime.strptime(summary[0]["PubDate"][:8], "%Y %b"): #If new: Get further information

src/p/e/PEATDB-2.3/PEATDB/plugins/biodatabaseplugin.py   PEATDB(Download)
 
        for i in idlist:
            handle = Entrez.esummary(db=db, id=i)
            rec = Entrez.read(handle)
            for f in fields:

src/d/e/denigma-HEAD/denigma/library.py   denigma(Download)
    def summary(self, id, printing=False):
        handle = Entrez.esummary(db='pubmed', id=id)
        r = Entrez.read(handle)
        #print r[0]
        if printing:

src/c/l/clusterDbAnalysis-HEAD/convertGenbank2table.py   clusterDbAnalysis(Download)
    #there can me multiple records returned
    for thisID in IDlist:
        summaries = Entrez.read(Entrez.esummary(db="nucleotide", id=thisID))
        for s in summaries:
            strainIDs.append(s['TaxId'])

src/b/c/bcbb-HEAD/rest_apis/find_geo_data.py   bcbb(Download)
    results = Entrez.read(handle)
    for geo_id in results['IdList']:
        handle = Entrez.esummary(db="gds", id=geo_id)
        summary = Entrez.read(handle)
        samples = []

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