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Code for more fancy file handles.


Classes:

UndoHandle     File object decorator with support for undo-like operations.

Additional private classes used in Bio.SeqIO and Bio.SearchIO for indexing
files are also defined under Bio.File but these are not intended for direct
use.

src/c/g/cgat-HEAD/obsolete/get_sequences_from_www.py   cgat(Download)
import Bio.ExPASy as ExPASy
import Bio.SwissProt as SProt
from Bio import File
 
parser = E.OptionParser( version = "%prog version: $Id: get_sequences_from_www.py 2782 2009-09-10 11:40:29Z andreas $")

src/b/i/biopython-1.63/Bio/Blast/NCBIStandalone.py   biopython(Download)
from Bio._py3k import StringIO
 
from Bio import File
from Bio.ParserSupport import *
from Bio.Blast import Record

src/b/i/biopython-1.63/Bio/UniGene/UniGene.py   biopython(Download)
import sgmllib
import UserDict
import Bio.File
 
 

src/b/i/biopython-HEAD/Bio/Blast/NCBIStandalone.py   biopython(Download)
from Bio._py3k import StringIO
 
from Bio import File
from Bio.ParserSupport import *
from Bio.Blast import Record

src/b/i/biopython-1.63/Bio/ParserSupport.py   biopython(Download)
from Bio._py3k import StringIO
 
from Bio import File
 
# XML from python 2.0

src/b/i/biopython-HEAD/Bio/ParserSupport.py   biopython(Download)
from Bio._py3k import StringIO
 
from Bio import File
 
# XML from python 2.0

src/b/i/biopython-1.63/Bio/Phylo/_io.py   biopython(Download)
__docformat__ = "restructuredtext en"
 
from Bio import File
from Bio.Phylo import (
                       BaseTree, 

src/b/i/biopython-1.63/Bio/PDB/parse_pdb_header.py   biopython(Download)
import re
 
from Bio import File
 
 

src/b/i/biopython-1.63/Bio/Nexus/Nexus.py   biopython(Download)
import sys
 
from Bio import File
from Bio.Alphabet import IUPAC
from Bio.Data import IUPACData

src/b/i/biopython-1.63/Bio/Application/__init__.py   biopython(Download)
from subprocess import CalledProcessError as _ProcessCalledError
 
from Bio import File
 
#Use this regular expression to test the property names are going to

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