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Code to work with GenBank formatted files.

Rather than using Bio.GenBank, you are now encouraged to use Bio.SeqIO with
the "genbank" or "embl" format names to parse GenBank or EMBL files into
SeqRecord and SeqFeature objects (see the Biopython tutorial for details).

Using Bio.GenBank directly to parse GenBank files is only useful if you want
to obtain GenBank-specific Record objects, which is a much closer
representation to the raw file contents that the SeqRecord alternative from
the FeatureParser (used in Bio.SeqIO).(more...)

src/b/i/biopython-1.63/Scripts/Performance/biosql_performance_load.py   biopython(Download)
import time
# set up the connection
from Bio import GenBank
from BioSQL import BioSeqDatabase
server = BioSeqDatabase.open_database(host="192.168.0.192", user="root",

src/b/i/biopython-1.63/Scripts/GenBank/find_parser_problems.py   biopython(Download)
 
# GenBank
from Bio import GenBank
 
verbose = 0

src/b/i/biopython-1.63/Scripts/GenBank/check_output_simple.py   biopython(Download)
 
# GenBank stuff to test
from Bio import GenBank
 
if len(sys.argv) != 2:

src/b/i/biopython-1.63/Scripts/GenBank/check_output.py   biopython(Download)
 
# biopython
from Bio import GenBank
 
 

src/b/i/biopython-1.63/Bio/GenBank/Record.py   biopython(Download)
"""
# local stuff
import Bio.GenBank
 
 

src/b/i/biopython-HEAD/Scripts/Performance/biosql_performance_load.py   biopython(Download)
import time
# set up the connection
from Bio import GenBank
from BioSQL import BioSeqDatabase
server = BioSeqDatabase.open_database(host="192.168.0.192", user="root",

src/b/i/biopython-HEAD/Scripts/GenBank/find_parser_problems.py   biopython(Download)
 
# GenBank
from Bio import GenBank
 
verbose = 0

src/b/i/biopython-HEAD/Scripts/GenBank/check_output_simple.py   biopython(Download)
 
# GenBank stuff to test
from Bio import GenBank
 
if len(sys.argv) != 2:

src/b/i/biopython-HEAD/Scripts/GenBank/check_output.py   biopython(Download)
 
# biopython
from Bio import GenBank
 
 

src/b/i/biopython-HEAD/Bio/GenBank/Record.py   biopython(Download)
"""
# local stuff
import Bio.GenBank
 
 

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