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Parse GenBank files into Record objects (OBSOLETE).

Direct use of this class is discouraged, and may be deprecated in
a future release of Biopython.

Please use the Bio.GenBank.parse(...) or Bio.GenBank.read(...) functions
instead.

src/b/i/biopython-1.63/Scripts/GenBank/check_output.py   biopython(Download)
def write_format(file):
    record_parser = GenBank.RecordParser(debug_level=2)
 
    print("Testing GenBank writing for %s..." % os.path.basename(file))
    # be able to handle gzipped files

src/b/i/biopython-HEAD/Scripts/GenBank/check_output.py   biopython(Download)
def write_format(file):
    record_parser = GenBank.RecordParser(debug_level=2)
 
    print("Testing GenBank writing for %s..." % os.path.basename(file))
    # be able to handle gzipped files

src/p/y/pydna-0.6.1/pydna/dsdna.py   pydna(Download)
from Bio.SeqFeature         import FeatureLocation, CompoundLocation
from Bio.SeqUtils.CheckSum  import seguid
from Bio.GenBank            import RecordParser
from pydna.utils            import eq, cseguid
from pydna.findsubstrings_suffix_arrays_python import common_sub_strings
                original_format = "genbank"
                handle.seek(0)
                parser = RecordParser()
                residue_type = parser.parse(handle).residue_type
                if "circular" in residue_type:

src/p/y/python-dna-0.1.2/pydna/dsdna.py   python-dna(Download)
from Bio.SeqFeature         import FeatureLocation
from Bio.SeqUtils.CheckSum  import seguid
from Bio.GenBank            import RecordParser
from pydna.utils            import eq
from pydna.findsubstrings_suffix_arrays_python import common_sub_strings
                original_format = "genbank"
                handle.seek(0)
                parser = RecordParser()
                residue_type = parser.parse(handle).residue_type
                if "circular" in residue_type:

src/p/y/pydna-0.6.1/pydna/download.py   pydna(Download)
from Bio                    import Entrez
from Bio.Alphabet.IUPAC     import IUPACAmbiguousDNA
from Bio.GenBank            import RecordParser
from Bio.SeqUtils.CheckSum  import seguid
 

src/p/y/python-dna-0.1.2/pydna/download.py   python-dna(Download)
from Bio                    import Entrez
from Bio.Alphabet.IUPAC     import IUPACAmbiguousDNA
from Bio.GenBank            import RecordParser
from Bio.SeqUtils.CheckSum  import seguid
 

src/b/i/biopython-1.63/Tests/test_GenBank.py   biopython(Download)
# test the parsers
feature_parser = GenBank.FeatureParser(debug_level = 0)
record_parser = GenBank.RecordParser(debug_level = 0)
 
all_parsers = [feature_parser, record_parser]
def t_write_format():
    record_parser = GenBank.RecordParser(debug_level = 0)
 
    for file in write_format_files:
        print("Testing GenBank writing for %s..." % os.path.basename(file))

src/b/i/biopython-HEAD/Tests/test_GenBank.py   biopython(Download)
# test the parsers
feature_parser = GenBank.FeatureParser(debug_level = 0)
record_parser = GenBank.RecordParser(debug_level = 0)
 
all_parsers = [feature_parser, record_parser]
def t_write_format():
    record_parser = GenBank.RecordParser(debug_level = 0)
 
    for file in write_format_files:
        print("Testing GenBank writing for %s..." % os.path.basename(file))