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src/b/i/biopython-1.63/Doc/examples/Proux_et_al_2002_Figure_6.py   biopython(Download)
        i += 1
 
gd_diagram.draw(format="linear", pagesize='A4', fragments=1,
                start=0, end=max_len)
gd_diagram.write(name + ".pdf", "PDF")

src/b/i/biopython-HEAD/Doc/examples/Proux_et_al_2002_Figure_6.py   biopython(Download)
        i += 1
 
gd_diagram.draw(format="linear", pagesize='A4', fragments=1,
                start=0, end=max_len)
gd_diagram.write(name + ".pdf", "PDF")

src/b/i/biopython-1.63/Doc/examples/ACT_example.py   biopython(Download)
                                border=colors.blue)
 
gd_diagram.draw(format="linear", fragments=3,
                orientation="landscape", pagesize=(20*cm, 10*cm))
gd_diagram.write(name + ".pdf", "PDF")
 
gd_diagram.draw(format="circular",

src/b/i/biopython-HEAD/Doc/examples/ACT_example.py   biopython(Download)
                                border=colors.blue)
 
gd_diagram.draw(format="linear", fragments=3,
                orientation="landscape", pagesize=(20*cm, 10*cm))
gd_diagram.write(name + ".pdf", "PDF")
 
gd_diagram.draw(format="circular",

src/c/l/clusterDbAnalysis-HEAD/lib/BioPythonGraphics.py   clusterDbAnalysis(Download)
    loffset = float((pagew_px/2) - (r2mid/scale))
 
    gd_diagram.draw(format="linear", start=start, end=end, fragments=1, pagesize=(ht, pagew_px), xl=(loffset/pagew_px), xr=(roffset/pagew_px), yt=yt, yb=yb )
 
    gd_diagram.write(imgfileloc, "PNG")

src/p/i/picobio-HEAD/assembly_comparison/assembly_comparison.py   picobio(Download)
 
page = (100*cm, 100*cm)
gd_diagram.draw(format="circular", circular=True, circle_core=0.5,
                pagesize=page, start=0, end=max_len)
gd_diagram.write(diagram_pdf, "PDF")

src/m/g/mgtaxa-HEAD/MGT/Proj/CrisprMooreApp.py   mgtaxa(Download)
        #gd_diagram.draw(format="linear", pagesize='A4', fragments=4,
        #                start=0, end=len(seqRec))
        gd_diagram.draw(format="linear", pagesize=(3000,400), fragments=1,
                        start=0, end=len(seqRec))
        gd_diagram.write(outGraphFileRoot+".pdf", "PDF")

src/p/i/picobio-HEAD/assembly_comparison/multi_comparison.py   picobio(Download)
#Set size based on max track length?
page = (2*cm + 5*cm*len(assemblies_fasta), 100*cm*max_len/5000000)
gd_diagram.draw(format="linear", fragments=1,
                pagesize=page, start=0, end=max_len)
gd_diagram.write(diagram_pdf, "PDF")

src/c/l/clusterDbAnalysis-HEAD/src/db_displayExternalClusterHits.py   clusterDbAnalysis(Download)
            break
 
    gd_diagram.draw(format="linear", start=start, end=end, fragments=1)
    pathname = os.path.join( options.outdir, sanitizeString(geneid, False) + ".svg" )
    gd_diagram.write(pathname, "SVG")

src/b/i/biopython-1.63/Tests/test_GenomeDiagram.py   biopython(Download)
                               center = 0)
 
        gdd.draw(format='linear',
                 tracklines=False,
                 pagesize=(15*cm, 15*cm),
                 fragments=1,
                 start=0, end=points)
        gdd.write(os.path.join('Graphics', "line_graph.pdf"), "pdf")
        #Circular diagram
        gdd.draw(tracklines=False,
 
        #And draw it...
        gdd.draw(format='linear', orientation='landscape',
                 tracklines=False, pagesize=(10*cm, 6*cm), fragments=1,
                 start=start, end=end)
        #Circular with a particular start/end is a bit odd, but by setting
        #circular=False (above) a sweep of 90% is used (a wedge is left out)
        gdd.draw(format='circular',
                 tracklines=False, pagesize=(10*cm, 10*cm),
                 start=start, end=end)
 
        #Finally draw it in both formats,
        gdd.draw(format='linear', orientation='landscape',
             tracklines=0, pagesize='A4', fragments=3)
        output_filename = os.path.join('Graphics', 'GD_by_meth_linear.pdf')

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