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src/b/i/biopython-1.63/Tests/test_HMMCasino.py biopython(Download)
# -- Standard Training with known states print("Training with the Standard Trainer...") known_training_seq = Trainer.TrainingSequence(rolls, states) trainer = Trainer.KnownStateTrainer(standard_mm)
# -- Baum-Welch training without known state sequences print("Training with Baum-Welch...") training_seq = Trainer.TrainingSequence(rolls, Seq("", DiceTypeAlphabet())) trainer = Trainer.BaumWelchTrainer(baum_welch_mm)
src/b/i/biopython-HEAD/Tests/test_HMMCasino.py biopython(Download)
# -- Standard Training with known states print("Training with the Standard Trainer...") known_training_seq = Trainer.TrainingSequence(rolls, states) trainer = Trainer.KnownStateTrainer(standard_mm)
# -- Baum-Welch training without known state sequences print("Training with Baum-Welch...") training_seq = Trainer.TrainingSequence(rolls, Seq("", DiceTypeAlphabet())) trainer = Trainer.BaumWelchTrainer(baum_welch_mm)
src/b/i/biopython-1.63/Tests/test_HMMGeneral.py biopython(Download)
emission_seq = Seq("ABB", LetterAlphabet()) state_seq = Seq("", NumberAlphabet()) training_seq = Trainer.TrainingSequence(emission_seq, state_seq) # finally set up the DP
src/b/i/biopython-HEAD/Tests/test_HMMGeneral.py biopython(Download)
emission_seq = Seq("ABB", LetterAlphabet()) state_seq = Seq("", NumberAlphabet()) training_seq = Trainer.TrainingSequence(emission_seq, state_seq) # finally set up the DP