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src/r/n/rnaseqlib-HEAD/rnaseqlib/motif/motif_clustering.py   rnaseqlib(Download)
    Return PWM and motif object.
    """
    from Bio import Motif
    from Bio.Alphabet import IUPAC
    import Bio.Seq as bio_seq

src/s/t/STEME-1.8.23/python/stempy/planted_sites.py   STEME(Download)
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio import SeqIO, Motif
from Bio.Alphabet import generic_dna
from itertools import imap

src/s/e/seriesoftubes-0.9.6.9/bioplus/sitefinder.py   seriesoftubes(Download)
from tabfile import TabFile, MacsFile, BedFile
import operator
import Bio.Motif
import Bio.SeqIO
try:

src/s/t/STEME-1.8.23/python/stempy/meme.py   STEME(Download)
 
        # parse output
        from Bio import Motif
        for motif in Motif.parse(open(os.path.join(self.options.output_dir, 'meme.txt')), "MEME"):
            for instance in motif.instances:

src/s/e/seriesoftubes-0.9.6.9/scripts/analyze.py   seriesoftubes(Download)
"""
from os.path import exists
import Bio.Motif
from bioplus.sitefinder import find_sites, USE_MOODS
from seriesoftubes.fnparsers import PeaksFilenameParser

src/m/o/MotifAnalysisPackage-0.0.1/motifStatistics/motif.py   MotifAnalysisPackage(Download)
import constants
import bedFunctions
from Bio import Motif
 
#################################################################################################

src/b/i/biopython-HEAD/Tests/test_Motif.py   biopython(Download)
with warnings.catch_warnings():
    warnings.simplefilter("ignore", BiopythonDeprecationWarning)
    from Bio import Motif
 
from Bio.Alphabet import IUPAC

src/b/i/biopython-1.63/Tests/test_Motif.py   biopython(Download)
 
from Bio.Alphabet import IUPAC
from Bio import Motif
from Bio.Seq import Seq