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src/h/y/hy454-0.4.4/lib/hy454/_graph.py   hy454(Download)
 
    # set laplace = True to include the backgrounds
    pwm = _fix_ambigs(motif.pwm(laplace=False), alph)
 
    # heuristic to determine whether nucleotide or protein alphabet

src/r/n/rnaseqlib-HEAD/rnaseqlib/motif/motif_clustering.py   rnaseqlib(Download)
        motif_obj.add_instance(curr_seq)
    # Compute PWM
    pwm = motif_obj.pwm()
    return pwm, motif_obj