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src/s/e/seriesoftubes-0.9.6.9/bioplus/motif.py   seriesoftubes(Download)
        import Bio.Motif.Parsers.MEME as MEME
        f = open(filename)
        MEME_object = MEME.read(f)
        motif_name = 'Motif ' + str(n)
        biopython_motif = MEME_object.get_motif_by_name(motif_name)

src/b/i/biopython-1.63/Bio/Motif/__init__.py   biopython(Download)
from Bio.Motif._Motif import Motif
from Bio.Motif.Parsers.AlignAce import read as _AlignAce_read
from Bio.Motif.Parsers.MEME import read as _MEME_read
from Bio.Motif.Thresholds import ScoreDistribution
 

src/b/i/biopython-HEAD/Bio/Motif/__init__.py   biopython(Download)
from Bio.Motif._Motif import Motif
from Bio.Motif.Parsers.AlignAce import read as _AlignAce_read
from Bio.Motif.Parsers.MEME import read as _MEME_read
from Bio.Motif.Thresholds import ScoreDistribution
 

src/w/l/wLib-1.1.0/external/Motif/__init__.py   wLib(Download)
from Bio.Motif._Motif import Motif
from Bio.Motif.Parsers.AlignAce import read as _AlignAce_read
from Bio.Motif.Parsers.MEME import read as _MEME_read
from Bio.Motif.Thresholds import ScoreDistribution
 

src/b/i/biopython-HEAD/Tests/test_Motif.py   biopython(Download)
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.out")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.5.7')
        self.assertEqual(record.datafile, 'test.fa')
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.dna.oops.txt")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.0')
        self.assertEqual(record.datafile, 'INO_up800.s')
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.protein.oops.txt")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.0')
        self.assertEqual(record.datafile, 'adh.s')
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.protein.tcm.txt")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.0')
        self.assertEqual(record.datafile, 'farntrans5.s')

src/b/i/biopython-1.63/Tests/test_Motif.py   biopython(Download)
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.out")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.5.7')
        self.assertEqual(record.datafile, 'test.fa')
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.dna.oops.txt")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.0')
        self.assertEqual(record.datafile, 'INO_up800.s')
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.protein.oops.txt")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.0')
        self.assertEqual(record.datafile, 'adh.s')
        from Bio.Motif.Parsers import MEME
        handle = open("Motif/meme.protein.tcm.txt")
        record = MEME.read(handle)
        self.assertEqual(record.version, '3.0')
        self.assertEqual(record.datafile, 'farntrans5.s')