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src/b/i/biopython-1.63/Tests/test_NNGene.py   biopython(Download)
                           "*" : "AGTC"}
 
        self.motif_coder = Schema.Schema(ambiguity_chars)
 
        self.match_string = "GATAG"
                           "*" : "AGTC"}
 
        motif_representation = Schema.Schema(ambiguity_chars)
        motifs = ("GA", "GATAG", "GA*AG", "GATRG", "*A")
        self.motif_coder = Schema.SchemaCoder(motifs,
                           "*" : "AGTC"}
 
        self.schema = Schema.Schema(ambiguity_chars)
 
    def test_easy_from_motifs(self):

src/b/i/biopython-HEAD/Tests/test_NNGene.py   biopython(Download)
                           "*" : "AGTC"}
 
        self.motif_coder = Schema.Schema(ambiguity_chars)
 
        self.match_string = "GATAG"
                           "*" : "AGTC"}
 
        motif_representation = Schema.Schema(ambiguity_chars)
        motifs = ("GA", "GATAG", "GA*AG", "GATRG", "*A")
        self.motif_coder = Schema.SchemaCoder(motifs,
                           "*" : "AGTC"}
 
        self.schema = Schema.Schema(ambiguity_chars)
 
    def test_easy_from_motifs(self):

src/b/i/biopython-HEAD/Tests/test_GARepair.py   biopython(Download)
 
# local stuff
from Bio.NeuralNetwork.Gene.Schema import Schema
from Bio.GA.Organism import Organism
from Bio.GA.Repair.Stabilizing import AmbiguousRepair
    def setUp(self):
        alphabet = TestAlphabet()
        test_genome = MutableSeq("11*22*33*", alphabet)
        self.organism = Organism(test_genome, test_fitness)
        self.ambig_info = Schema(alphabet.alphabet_matches)

src/b/i/biopython-1.63/Tests/test_GARepair.py   biopython(Download)
 
# local stuff
from Bio.NeuralNetwork.Gene.Schema import Schema
from Bio.GA.Organism import Organism
from Bio.GA.Repair.Stabilizing import AmbiguousRepair
    def setUp(self):
        alphabet = TestAlphabet()
        test_genome = MutableSeq("11*22*33*", alphabet)
        self.organism = Organism(test_genome, test_fitness)
        self.ambig_info = Schema(alphabet.alphabet_matches)