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Bio.Nexus.Nexus

All Samples(13)  |  Call(0)  |  Derive(0)  |  Import(13)


src/c/g/cgat-HEAD/scripts/optic/evaluate_trees.py   cgat(Download)
import optparse
 
from Bio.Nexus import Nexus
from Bio.Nexus.Nodes import Node
 


src/c/g/cgat-HEAD/scripts/optic/evaluate_bootstrap.py   cgat(Download)
import sets
 
from Bio.Nexus import Nexus
from Bio.Nexus.Nodes import Node
 


src/c/g/cgat-HEAD/scripts/tree_species2genes.py   cgat(Download)
import popen2
 
from Bio.Nexus import Nexus
from Bio.Nexus.Nodes import Node
 


src/c/g/cgat-HEAD/scripts/tree_map_leaves.py   cgat(Download)
import popen2
 
from Bio.Nexus import Nexus
from Bio.Nexus.Nodes import Node
 


src/c/g/cgat-HEAD/scripts/tree_collapse_species.py   cgat(Download)
import popen2
 
from Bio.Nexus import Nexus
 
USAGE = """python %s [OPTIONS] < tree.in > tree.out


src/c/g/cgat-HEAD/scripts/tree2patterns.py   cgat(Download)
 
 
from Bio.Nexus import Nexus
from Bio.Nexus.Nodes import Node
 


src/b/i/biopython-1.63/Bio/Phylo/NexusIO.py   biopython(Download)
from itertools import chain
 
from Bio.Nexus import Nexus
from Bio.Phylo import Newick, NewickIO
 


src/b/i/biopython-1.63/Bio/AlignIO/NexusIO.py   biopython(Download)
 
from Bio.SeqRecord import SeqRecord
from Bio.Nexus import Nexus
from Bio.Align import MultipleSeqAlignment
from .Interfaces import AlignmentWriter


src/b/i/biopython-HEAD/Bio/Phylo/NexusIO.py   biopython(Download)
from itertools import chain
 
from Bio.Nexus import Nexus
from Bio.Phylo import Newick, NewickIO
 


src/b/i/biopython-HEAD/Bio/AlignIO/NexusIO.py   biopython(Download)
 
from Bio.SeqRecord import SeqRecord
from Bio.Nexus import Nexus
from Bio.Align import MultipleSeqAlignment
from .Interfaces import AlignmentWriter


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