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src/b/i/biopython-1.63/Bio/PDB/HSExposure.py   biopython(Download)
from math import pi
 
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.PDBParser import PDBParser
from Bio.PDB.Polypeptide import CaPPBuilder, is_aa
from Bio.PDB.Vector import rotaxis
 
 
class _AbstractHSExposure(AbstractPropertyMap):
class ExposureCN(AbstractPropertyMap):
    def __init__(self, model, radius=12.0, offset=0):
        """
        A residue's exposure is defined as the number of CA atoms around
        that residues CA atom. A dictionary is returned that uses a L{Residue}

src/b/i/biopython-HEAD/Bio/PDB/HSExposure.py   biopython(Download)
from math import pi
 
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.PDBParser import PDBParser
from Bio.PDB.Polypeptide import CaPPBuilder, is_aa
from Bio.PDB.Vector import rotaxis
 
 
class _AbstractHSExposure(AbstractPropertyMap):
class ExposureCN(AbstractPropertyMap):
    def __init__(self, model, radius=12.0, offset=0):
        """
        A residue's exposure is defined as the number of CA atoms around
        that residues CA atom. A dictionary is returned that uses a L{Residue}

src/b/i/biopython-1.63/Bio/PDB/ResidueDepth.py   biopython(Download)
 
from Bio.PDB import Selection
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.Polypeptide import is_aa
 
class ResidueDepth(AbstractPropertyMap):
    """
    Calculate residue and CA depth for all residues.
    """
    def __init__(self, model, pdb_file):

src/b/i/biopython-HEAD/Bio/PDB/ResidueDepth.py   biopython(Download)
 
from Bio.PDB import Selection
from Bio.PDB.AbstractPropertyMap import AbstractPropertyMap
from Bio.PDB.Polypeptide import is_aa
 
class ResidueDepth(AbstractPropertyMap):
    """
    Calculate residue and CA depth for all residues.
    """
    def __init__(self, model, pdb_file):