Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(8)  |  Call(0)  |  Derive(4)  |  Import(4)

src/b/i/biopython-1.63/Bio/PDB/NACCESS.py   biopython(Download)
import subprocess
from Bio.PDB.PDBIO import PDBIO
from Bio.PDB.AbstractPropertyMap import AbstractResiduePropertyMap, AbstractAtomPropertyMap
 
"""Interface for the program NACCESS.
class NACCESS(AbstractResiduePropertyMap):
 
    def __init__(self, model, pdb_file=None,
                 naccess_binary='naccess', tmp_directory='/tmp'):
        res_data, atm_data = run_naccess(model, pdb_file,

src/b/i/biopython-HEAD/Bio/PDB/NACCESS.py   biopython(Download)
import subprocess
from Bio.PDB.PDBIO import PDBIO
from Bio.PDB.AbstractPropertyMap import AbstractResiduePropertyMap, AbstractAtomPropertyMap
 
"""Interface for the program NACCESS.
class NACCESS(AbstractResiduePropertyMap):
 
    def __init__(self, model, pdb_file=None,
                 naccess_binary='naccess', tmp_directory='/tmp'):
        res_data, atm_data = run_naccess(model, pdb_file,

src/b/i/biopython-1.63/Bio/PDB/DSSP.py   biopython(Download)
from Bio.Data import SCOPData
 
from Bio.PDB.AbstractPropertyMap import AbstractResiduePropertyMap
from Bio.PDB.PDBExceptions import PDBException
from Bio.PDB.PDBParser import PDBParser
class DSSP(AbstractResiduePropertyMap):
    """
    Run DSSP on a pdb file, and provide a handle to the
    DSSP secondary structure and accessibility.
 

src/b/i/biopython-HEAD/Bio/PDB/DSSP.py   biopython(Download)
from Bio.Data import SCOPData
 
from Bio.PDB.AbstractPropertyMap import AbstractResiduePropertyMap
from Bio.PDB.PDBExceptions import PDBException
from Bio.PDB.PDBParser import PDBParser
class DSSP(AbstractResiduePropertyMap):
    """
    Run DSSP on a pdb file, and provide a handle to the
    DSSP secondary structure and accessibility.