Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(12)  |  Call(6)  |  Derive(0)  |  Import(6)

src/b/i/biopython-1.63/Bio/PDB/StructureBuilder.py   biopython(Download)
from Bio.PDB.Chain import Chain
from Bio.PDB.Residue import Residue, DisorderedResidue
from Bio.PDB.Atom import Atom, DisorderedAtom
 
from Bio.PDB.PDBExceptions import PDBConstructionException
                                     self.line_counter),
                                  PDBConstructionWarning)
        atom=self.atom=Atom(name, coord, b_factor, occupancy, altloc,
                            fullname, serial_number, element)
        if altloc!=" ":

src/b/i/biopython-HEAD/Bio/PDB/StructureBuilder.py   biopython(Download)
from Bio.PDB.Chain import Chain
from Bio.PDB.Residue import Residue, DisorderedResidue
from Bio.PDB.Atom import Atom, DisorderedAtom
 
from Bio.PDB.PDBExceptions import PDBConstructionException
                                     self.line_counter),
                                  PDBConstructionWarning)
        atom=self.atom=Atom(name, coord, b_factor, occupancy, altloc,
                            fullname, serial_number, element)
        if altloc!=" ":

src/c/c/cclib-1.2/src/cclib/bridge/cclib2biopython.py   cclib(Download)
# the full license online at http://www.gnu.org/copyleft/lgpl.html.
 
from Bio.PDB.Atom import Atom
from cclib.parser.utils import PeriodicTable
 
    bioatoms = []
    for coords, atomno in zip(atomcoords, atomnos):
        bioatoms.append(Atom(pt.element[atomno], coords, 0, 0, 0, 0, 0))
    return bioatoms
 

src/r/m/RMG-Py-HEAD/external/cclib/bridge/cclib2biopython.py   RMG-Py(Download)
__revision__ = "$Revision: 709 $"
 
from Bio.PDB.Atom import Atom
from cclib.parser.utils import PeriodicTable
 
    bioatoms = []
    for coords, atomno in zip(atomcoords, atomnos):
        bioatoms.append(Atom(pt.element[atomno], coords, 0, 0, 0, 0, 0))
    return bioatoms
 

src/b/i/biopython-1.63/Bio/PDB/Selection.py   biopython(Download)
import itertools
 
from Bio.PDB.Atom import Atom
from Bio.PDB.Entity import Entity
from Bio.PDB.PDBExceptions import PDBException

src/b/i/biopython-HEAD/Bio/PDB/Selection.py   biopython(Download)
import itertools
 
from Bio.PDB.Atom import Atom
from Bio.PDB.Entity import Entity
from Bio.PDB.PDBExceptions import PDBException

src/b/i/biopython-1.63/Tests/test_PDB.py   biopython(Download)
 
        res = Residue.Residue((' ', 1, ' '), 'DUM', '')
        atm = Atom.Atom('CA', [0.1, 0.1, 0.1], 1.0, 1.0, ' ', 'CA', 1, 'C')
        res.add(atm)
 

src/b/i/biopython-HEAD/Tests/test_PDB.py   biopython(Download)
 
        res = Residue.Residue((' ', 1, ' '), 'DUM', '')
        atm = Atom.Atom('CA', [0.1, 0.1, 0.1], 1.0, 1.0, ' ', 'CA', 1, 'C')
        res.add(atm)