Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(66)  |  Call(46)  |  Derive(0)  |  Import(20)

src/m/d/MDAnalysis-0.8.1/MDAnalysis/coordinates/pdb/extensions.py   MDAnalysis(Download)
 
 
sloppyparser = Bio.PDB.PDBParser(PERMISSIVE=True,structure_builder=SloppyStructureBuilder())
 
def get_structure(pdbfile,pdbid='system'):

src/b/i/bioEuler-HEAD/src/OLD/PDBReader.py   bioEuler(Download)
    def get_protein_from_PDB(self):
        file_name = self.name + ".pdb"
        self._get_file(file_name, self.path)
 
        p = PDB.PDBParser(PERMISSIVE=1)

src/b/i/biopython-1.63/Bio/PDB/Superimposer.py   biopython(Download)
    import sys
 
    from Bio.PDB import PDBParser, Selection
 
    p=PDBParser()

src/b/i/biopython-HEAD/Bio/PDB/Superimposer.py   biopython(Download)
    import sys
 
    from Bio.PDB import PDBParser, Selection
 
    p=PDBParser()

src/b/i/biopython-1.63/Bio/PDB/StructureAlignment.py   biopython(Download)
    from Bio.Alphabet import generic_protein
    from Bio import AlignIO
    from Bio.PDB import PDBParser
 
    if len(sys.argv) != 4:
 
    # The structures
    p=PDBParser()
    s1=p.get_structure('1', pdb_file1)
    p=PDBParser()

src/b/i/biopython-HEAD/Bio/PDB/StructureAlignment.py   biopython(Download)
    from Bio.Alphabet import generic_protein
    from Bio import AlignIO
    from Bio.PDB import PDBParser
 
    if len(sys.argv) != 4:
 
    # The structures
    p=PDBParser()
    s1=p.get_structure('1', pdb_file1)
    p=PDBParser()

src/b/i/bioEuler-HEAD/src/parser.py   bioEuler(Download)
import os
import sys
 
from Bio.PDB import PDBParser, PPBuilder, Polypeptide
from numpy import array, matrix, linalg
 
def get_structure(name, path):
    parser = PDBParser()

src/b/i/biopython-1.63/Bio/PDB/ResidueDepth.py   biopython(Download)
 
    import sys
    from Bio.PDB import PDBParser
 
    p=PDBParser()

src/b/i/biopython-HEAD/Bio/PDB/ResidueDepth.py   biopython(Download)
 
    import sys
    from Bio.PDB import PDBParser
 
    p=PDBParser()

src/b/i/biopython-1.63/Bio/PDB/PSEA.py   biopython(Download)
 
    import sys
    from Bio.PDB import PDBParser
 
    # Parse PDB file
    p=PDBParser()

  1 | 2 | 3  Next