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src/b/i/biopython-1.63/Bio/PDB/PDBIO.py   biopython(Download)
    p=PDBParser(PERMISSIVE=True)
 
    s=p.get_structure("test", sys.argv[1])
 
    io=PDBIO()
    io.set_structure(s)
    io.save("out1.pdb")
 
    with open("out2.pdb", "w") as fp:
        s1=p.get_structure("test1", sys.argv[1])
    with open("out2.pdb", "w") as fp:
        s1=p.get_structure("test1", sys.argv[1])
        s2=p.get_structure("test2", sys.argv[2])
        io=PDBIO(1)
        io.set_structure(s1)

src/b/i/biopython-HEAD/Bio/PDB/PDBIO.py   biopython(Download)
    p=PDBParser(PERMISSIVE=True)
 
    s=p.get_structure("test", sys.argv[1])
 
    io=PDBIO()
    io.set_structure(s)
    io.save("out1.pdb")
 
    with open("out2.pdb", "w") as fp:
        s1=p.get_structure("test1", sys.argv[1])
    with open("out2.pdb", "w") as fp:
        s1=p.get_structure("test1", sys.argv[1])
        s2=p.get_structure("test2", sys.argv[2])
        io=PDBIO(1)
        io.set_structure(s1)

src/b/i/biopython-1.63/Bio/PDB/Polypeptide.py   biopython(Download)
    p=PDBParser(PERMISSIVE=True)
 
    s=p.get_structure("scr", sys.argv[1])
 
    ppb=PPBuilder()

src/b/i/biopython-1.63/Bio/PDB/HSExposure.py   biopython(Download)
 
    p=PDBParser()
    s=p.get_structure('X', sys.argv[1])
    model=s[0]
 

src/b/i/biopython-1.63/Bio/PDB/FragmentMapper.py   biopython(Download)
 
    p = PDBParser()
    s = p.get_structure("X", sys.argv[1])
    m = s[0]
    fm = FragmentMapper(m, 10, 5, "levitt_data")

src/b/i/biopython-1.63/Bio/PDB/DSSP.py   biopython(Download)
 
    p = PDBParser()
    s = p.get_structure('X', sys.argv[1])
    model = s[0]
    d = DSSP(model, sys.argv[1])

src/b/i/biopython-1.63/Bio/PDB/Dice.py   biopython(Download)
 
    p=PDBParser()
    s=p.get_structure("scr", sys.argv[1])
 
    extract(s, " ", 1, 100, "out.pdb")

src/b/i/biopython-HEAD/Bio/PDB/Polypeptide.py   biopython(Download)
    p=PDBParser(PERMISSIVE=True)
 
    s=p.get_structure("scr", sys.argv[1])
 
    ppb=PPBuilder()

src/b/i/biopython-HEAD/Bio/PDB/HSExposure.py   biopython(Download)
 
    p=PDBParser()
    s=p.get_structure('X', sys.argv[1])
    model=s[0]
 

src/b/i/biopython-HEAD/Bio/PDB/FragmentMapper.py   biopython(Download)
 
    p = PDBParser()
    s = p.get_structure("X", sys.argv[1])
    m = s[0]
    fm = FragmentMapper(m, 10, 5, "levitt_data")

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