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src/b/i/biopython-1.63/Bio/PDB/Superimposer.py   biopython(Download)
 
    p=PDBParser()
    s1=p.get_structure("FIXED", sys.argv[1])
    fixed=Selection.unfold_entities(s1, "A")
 
    s2=p.get_structure("MOVING", sys.argv[1])

src/b/i/biopython-1.63/Bio/PDB/StructureAlignment.py   biopython(Download)
    # The structures
    p=PDBParser()
    s1=p.get_structure('1', pdb_file1)
    p=PDBParser()
    s2=p.get_structure('2', pdb_file2)

src/b/i/biopython-HEAD/Bio/PDB/Superimposer.py   biopython(Download)
 
    p=PDBParser()
    s1=p.get_structure("FIXED", sys.argv[1])
    fixed=Selection.unfold_entities(s1, "A")
 
    s2=p.get_structure("MOVING", sys.argv[1])

src/b/i/biopython-HEAD/Bio/PDB/StructureAlignment.py   biopython(Download)
    # The structures
    p=PDBParser()
    s1=p.get_structure('1', pdb_file1)
    p=PDBParser()
    s2=p.get_structure('2', pdb_file2)

src/b/i/biopython-1.63/Bio/PDB/ResidueDepth.py   biopython(Download)
 
    p=PDBParser()
    s=p.get_structure("X", sys.argv[1])
    model=s[0]
 

src/b/i/biopython-1.63/Bio/PDB/PSEA.py   biopython(Download)
    # Parse PDB file
    p=PDBParser()
    s=p.get_structure('X', sys.argv[1])
 
    # Annotate structure with PSEA sceondary structure info

src/b/i/biopython-1.63/Bio/PDB/NACCESS.py   biopython(Download)
 
    p = PDBParser()
    s = p.get_structure('X', sys.argv[1])
    model = s[0]
 

src/b/i/biopython-HEAD/Bio/PDB/ResidueDepth.py   biopython(Download)
 
    p=PDBParser()
    s=p.get_structure("X", sys.argv[1])
    model=s[0]
 

src/b/i/biopython-HEAD/Bio/PDB/PSEA.py   biopython(Download)
    # Parse PDB file
    p=PDBParser()
    s=p.get_structure('X', sys.argv[1])
 
    # Annotate structure with PSEA sceondary structure info

src/b/i/biopython-HEAD/Bio/PDB/NACCESS.py   biopython(Download)
 
    p = PDBParser()
    s = p.get_structure('X', sys.argv[1])
    model = s[0]
 

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